A fast, easy-to-use platform for microbiome sequencing and analysis

Get started quickly with an intuitive interface and rapid, accurate analysis. One Codex is the world’s largest microbial reference database and can support millions of microbiome and infectious disease samples.

Accelerate your microbiome research with One Codex

Leading institutions trust One Codex for everything from microbiome sequencing to data analysis to reporting. Our customers include top academic labs, biotechnology companies developing live biotherapeutics (LBPs), and clinical laboratories performing infectious disease diagnostics.

Our advanced algorithms and curated database provide the most accurate picture of complex metagenomic samples. Meanwhile, an intuitive web-based interface makes data accessible to both bench scientists and computational biologists.

Turning biology into data

We make it easier to solve problems in biology through genomics. Go from stool sample to results quickly and easily - One Codex gives structure to complex datasets, answering questions like: "What microbes are present?" and "What are they doing?"

An easy-to-use web platform, simple APIs for accessing data programatically, and integrations with Illumina BaseSpace and other tools allow you and your collaborators to analyze hundreds or thousands of samples.

Fastest Turnaround Times

Save time with automated sequencing and analysis pipelines. Receive sequencing results in as little as two weeks, while analyses only take a few minutes.

Complete Reproducibility

Solve your reproducibility crisis and de-risk your research. Run the exact same analysis on sample number 1 and 1000, without worrying about bias from batch effects.

Secure and Compliant

Reduce your compliance burden. Our platform ensures your data is secure and can support almost any regulatory and compliance requirement from GxP to HIPAA.

Platform Features


Go from sequence to solution quickly with the most accurate microbiome analysis

  • Shotgun analysis
  • Amplicon analysis
  • Sample management and search
  • Sharing and collaboration
  • Get started with 25 free analyses
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Translate your research to trials, therapies, and more with the leading microbiome data platform

  • All Academic features
  • Custom analyses
  • Audit and access logging
  • HIPAA compliance
  • Premium support and SLA
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